HL_5KPX_042

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5KPX|1|27|G|386, 5KPX|1|27|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_042 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1794

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPX|1|27|A|382
5KPX|1|27|C|383
5KPX|1|27|A|384
5KPX|1|27|C|385
5KPX|1|27|G|386
5KPX|1|27|U|387
5KPX|1|27|G|388
5KPX|1|27|G|389
5KPX|1|27|U|390
5KPX|1|27|A|391
5KPX|1|27|U|392

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA

Chain W

50S ribosomal protein L28