HL_5L3P_010

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5L3P|1|A|G|329, 5L3P|1|A|A|330, 5L3P|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1448

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5L3P|1|A|G|327
5L3P|1|A|U|328
5L3P|1|A|G|329
5L3P|1|A|A|330
5L3P|1|A|C|331
5L3P|1|A|A|332
5L3P|1|A|G|333
5L3P|1|A|C|334
5L3P|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24