HL_5L3P_014

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5L3P|1|A|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1618

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5L3P|1|A|C|487
5L3P|1|A|G|488
5L3P|1|A|G|489
5L3P|1|A|C|490
5L3P|1|A|G|491
5L3P|1|A|A|492
5L3P|1|A|G|493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L22