HL_5L3P_043

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUAUUAAAAAC

Length

13 nucleotides

Bulged bases

5L3P|1|A|A|1780, 5L3P|1|A|U|1781, 5L3P|1|A|U|1782, 5L3P|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_043 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.3058

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5L3P|1|A|G|1776
5L3P|1|A|U|1777
5L3P|1|A|U|1778
5L3P|1|A|U|1779
5L3P|1|A|A|1780
5L3P|1|A|U|1781
5L3P|1|A|U|1782
5L3P|1|A|A|1783
5L3P|1|A|A|1784
5L3P|1|A|A|1785
5L3P|1|A|A|1786
5L3P|1|A|A|1787
5L3P|1|A|C|1788

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2