HL_5L3P_047

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5L3P|1|A|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1273

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5L3P|1|A|G|1949
5L3P|1|A|G|1950
5L3P|1|A|U|1951
5L3P|1|A|A|1952
5L3P|1|A|A|1953
5L3P|1|A|G|1954
5L3P|1|A|U|1955
5L3P|1|A|U|1956
5L3P|1|A|C|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA