HL_5L3P_052

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5L3P|1|A|A|2268, 5L3P|1|A|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1279

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5L3P|1|A|C|2264
5L3P|1|A|U|2265
5L3P|1|A|A|2266
5L3P|1|A|A|2267
5L3P|1|A|A|2268
5L3P|1|A|G|2269
5L3P|1|A|A|2270
5L3P|1|A|G|2271
5L3P|1|A|U|2272
5L3P|1|A|A|2273
5L3P|1|A|A|2274
5L3P|1|A|C|2275
5L3P|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain Q

50S ribosomal protein L16