HL_5L3P_072

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_072 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.1808

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5L3P|1|a|G|158
5L3P|1|a|G|159
5L3P|1|a|A|160
5L3P|1|a|A|161
5L3P|1|a|A|162
5L3P|1|a|C|163

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L19

Chain t

30S ribosomal protein S20