HL_5L3P_107
3D structure
- PDB id
- 5L3P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAG(5MU)(PSU)CGAAUCUG
- Length
- 13 nucleotides
- Bulged bases
- 5L3P|1|y|A|59, 5L3P|1|y|U|60
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5L3P_107 not in the Motif Atlas
- Homologous match to HL_5EL4_250
- Geometric discrepancy: 0.4635
- The information below is about HL_5EL4_250
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5L3P|1|y|C|51
5L3P|1|y|A|52
5L3P|1|y|G|53
5L3P|1|y|5MU|54
5L3P|1|y|PSU|55
5L3P|1|y|C|56
5L3P|1|y|G|57
5L3P|1|y|A|58
5L3P|1|y|A|59
5L3P|1|y|U|60
5L3P|1|y|C|61
5L3P|1|y|U|62
5L3P|1|y|G|63
Current chains
- Chain y
- deacylated A/R-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S ribosomal protein L11
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