HL_5L3P_122

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_122 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.2998

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5L3P|1|a|C|522
5L3P|1|a|A|523
5L3P|1|a|G|524
5L3P|1|a|C|525
5L3P|1|a|C|526
5L3P|1|a|7MG|527

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12