HL_5LI0_043

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

5LI0|1|A|A|1807, 5LI0|1|A|U|1808, 5LI0|1|A|C|1809, 5LI0|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_043 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.2178

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5LI0|1|A|U|1804
5LI0|1|A|U|1805
5LI0|1|A|U|1806
5LI0|1|A|A|1807
5LI0|1|A|U|1808
5LI0|1|A|C|1809
5LI0|1|A|A|1810
5LI0|1|A|A|1811
5LI0|1|A|A|1812
5LI0|1|A|A|1813
5LI0|1|A|A|1814

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2