HL_5LKS_012

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUCUUUCCCGCGCGGGGGAC

Length

21 nucleotides

Bulged bases

5LKS|1|L5|A|509, 5LKS|1|L5|U|514

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_012 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3894

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5LKS|1|L5|G|508
5LKS|1|L5|A|509
5LKS|1|L5|U|510
5LKS|1|L5|C|511
5LKS|1|L5|U|512
5LKS|1|L5|U|513
5LKS|1|L5|U|514
5LKS|1|L5|C|515
5LKS|1|L5|C|516
5LKS|1|L5|C|517
5LKS|1|L5|G|518
5LKS|1|L5|C|519
5LKS|1|L5|G|642
5LKS|1|L5|C|643
5LKS|1|L5|G|644
5LKS|1|L5|G|645
5LKS|1|L5|G|646
5LKS|1|L5|G|647
5LKS|1|L5|G|648
5LKS|1|L5|A|649
5LKS|1|L5|C|650

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a