HL_5LKS_038

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCCGCGAGGCGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_038 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3671

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5LKS|1|L5|G|2557
5LKS|1|L5|C|2558
5LKS|1|L5|G|2559
5LKS|1|L5|C|2560
5LKS|1|L5|C|2561
5LKS|1|L5|G|2562
5LKS|1|L5|C|2563
5LKS|1|L5|G|2564
5LKS|1|L5|A|2565
5LKS|1|L5|G|2566
5LKS|1|L5|G|2567
5LKS|1|L5|C|2568
5LKS|1|L5|G|2569
5LKS|1|L5|U|2570

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27