HL_5LKS_047

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUUAAUUAAAAC

Length

13 nucleotides

Bulged bases

5LKS|1|L5|A|3642, 5LKS|1|L5|A|3643, 5LKS|1|L5|U|3644, 5LKS|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_047 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2403

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5LKS|1|L5|G|3638
5LKS|1|L5|U|3639
5LKS|1|L5|U|3640
5LKS|1|L5|U|3641
5LKS|1|L5|A|3642
5LKS|1|L5|A|3643
5LKS|1|L5|U|3644
5LKS|1|L5|U|3645
5LKS|1|L5|A|3646
5LKS|1|L5|A|3647
5LKS|1|L5|A|3648
5LKS|1|L5|A|3649
5LKS|1|L5|C|3650

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37