HL_5LKS_050

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5LKS|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_050 not in the Motif Atlas

Geometric match to HL_5TBW_050

Geometric discrepancy: 0.1713

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5LKS|1|L5|U|3796
5LKS|1|L5|C|3797
5LKS|1|L5|U|3798
5LKS|1|L5|A|3799
5LKS|1|L5|A|3800
5LKS|1|L5|U|3801
5LKS|1|L5|U|3802
5LKS|1|L5|A|3803
5LKS|1|L5|G|3804

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA