HL_5LKS_052
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 5LKS|1|L5|A|3876, 5LKS|1|L5|A|3877, 5LKS|1|L5|C|3878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LKS_052 not in the Motif Atlas
- Homologous match to HL_5TBW_051
- Geometric discrepancy: 0.1382
- The information below is about HL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5LKS|1|L5|G|3873
5LKS|1|L5|G|3874
5LKS|1|L5|G|3875
5LKS|1|L5|A|3876
5LKS|1|L5|A|3877
5LKS|1|L5|C|3878
5LKS|1|L5|G|3879
5LKS|1|L5|G|3880
5LKS|1|L5|G|3881
5LKS|1|L5|C|3882
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain Le
- 60S ribosomal protein L32
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