HL_5LKS_057

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

5LKS|1|L5|A|4214, 5LKS|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_057 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1746

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5LKS|1|L5|U|4210
5LKS|1|L5|C|4211
5LKS|1|L5|A|4212
5LKS|1|L5|A|4213
5LKS|1|L5|A|4214
5LKS|1|L5|C|4215
5LKS|1|L5|G|4216
5LKS|1|L5|G|4217
5LKS|1|L5|U|4218
5LKS|1|L5|A|4219
5LKS|1|L5|A|4220
5LKS|1|L5|C|4221
5LKS|1|L5|G|4222

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

Ribosomal protein L29, isoform CRA_a