HL_5LKS_069

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5LKS|1|L5|G|4694, 5LKS|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_069 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.1908

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LKS|1|L5|C|4688
5LKS|1|L5|U|4689
5LKS|1|L5|G|4690
5LKS|1|L5|A|4691
5LKS|1|L5|A|4692
5LKS|1|L5|C|4693
5LKS|1|L5|G|4694
5LKS|1|L5|C|4695
5LKS|1|L5|C|4696
5LKS|1|L5|U|4697
5LKS|1|L5|C|4698
5LKS|1|L5|U|4699
5LKS|1|L5|A|4700
5LKS|1|L5|A|4701
5LKS|1|L5|G|4702

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40