HL_5LKS_088
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5LKS|1|S2|C|450, 5LKS|1|S2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LKS_088 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1908
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LKS|1|S2|C|441
5LKS|1|S2|C|442
5LKS|1|S2|U|443
5LKS|1|S2|G|444
5LKS|1|S2|A|445
5LKS|1|S2|G|446
5LKS|1|S2|A|447
5LKS|1|S2|A|448
5LKS|1|S2|A|449
5LKS|1|S2|C|450
5LKS|1|S2|G|451
5LKS|1|S2|G|452
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SY
- 40S ribosomal protein S24
Coloring options: