HL_5LKS_089

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

5LKS|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_089 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3879

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5LKS|1|S2|U|461
5LKS|1|S2|C|462
5LKS|1|S2|C|463
5LKS|1|S2|A|464
5LKS|1|S2|A|465
5LKS|1|S2|G|466
5LKS|1|S2|G|467
5LKS|1|S2|A|468

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6