HL_5LKS_122
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCGCAGCAGG
- Length
- 10 nucleotides
- Bulged bases
- 5LKS|1|L5|C|2794, 5LKS|1|L5|G|2796, 5LKS|1|L5|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LKS_122 not in the Motif Atlas
- Geometric match to HL_4V90_032
- Geometric discrepancy: 0.3481
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5LKS|1|L5|C|2791
5LKS|1|L5|C|2792
5LKS|1|L5|G|2793
5LKS|1|L5|C|2794
5LKS|1|L5|A|2795
5LKS|1|L5|G|2796
5LKS|1|L5|C|2797
5LKS|1|L5|A|2798
5LKS|1|L5|G|2799
5LKS|1|L5|G|2800
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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