HL_5LKS_124

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGCGGCGG

Length

9 nucleotides

Bulged bases

5LKS|1|L5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_124 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.2978

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5LKS|1|L5|C|3667
5LKS|1|L5|C|3668
5LKS|1|L5|G|3669
5LKS|1|L5|C|3670
5LKS|1|L5|G|3671
5LKS|1|L5|G|3672
5LKS|1|L5|C|3673
5LKS|1|L5|G|3674
5LKS|1|L5|G|3675

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15