HL_5LKS_134

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUCGCCGUGCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_134 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3712

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5LKS|1|S2|A|376
5LKS|1|S2|G|377
5LKS|1|S2|U|378
5LKS|1|S2|C|379
5LKS|1|S2|G|380
5LKS|1|S2|C|381
5LKS|1|S2|C|382
5LKS|1|S2|G|383
5LKS|1|S2|U|384
5LKS|1|S2|G|385
5LKS|1|S2|C|386
5LKS|1|S2|C|387
5LKS|1|S2|U|388

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11