HL_5LKS_136

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

5LKS|1|S2|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_136 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.259

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5LKS|1|S2|C|618
5LKS|1|S2|A|619
5LKS|1|S2|G|620
5LKS|1|S2|C|621
5LKS|1|S2|C|622
5LKS|1|S2|G|623

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23