3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LMR_015 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.1225
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38491.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

5LMR|1|A|C|689
5LMR|1|A|G|690
5LMR|1|A|G|691
5LMR|1|A|U|692
5LMR|1|A|G|693
5LMR|1|A|A|694
5LMR|1|A|A|695
5LMR|1|A|A|696
5LMR|1|A|U|697
5LMR|1|A|G|698

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain K
30S ribosomal protein S11
Chain X
Translation initiation factor IF-3
Chain Y
mRNA

Coloring options:


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