3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
5LMR|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LMR_017 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.1706
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

5LMR|1|A|G|786
5LMR|1|A|A|787
5LMR|1|A|U|788
5LMR|1|A|U|789
5LMR|1|A|A|790
5LMR|1|A|G|791
5LMR|1|A|A|792
5LMR|1|A|U|793
5LMR|1|A|A|794
5LMR|1|A|C|795
5LMR|1|A|C|796

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain X
Translation initiation factor IF-3
Chain Y
mRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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