HL_5LMT_030
3D structure
- PDB id
- 5LMT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.15 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5LMT|1|A|C|1363, 5LMT|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMT_030 not in the Motif Atlas
- Homologous match to HL_5J7L_029
- Geometric discrepancy: 0.1478
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LMT|1|A|G|1356
5LMT|1|A|A|1357
5LMT|1|A|U|1358
5LMT|1|A|C|1359
5LMT|1|A|A|1360
5LMT|1|A|G|1361
5LMT|1|A|C|1362
5LMT|1|A|C|1363
5LMT|1|A|A|1363|||A
5LMT|1|A|U|1364
5LMT|1|A|G|1365
5LMT|1|A|C|1366
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain V
- 30S ribosomal protein Thx
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