HL_5LMV_005

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

5LMV|1|A|U|202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMV_005 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.3983

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

5LMV|1|A|G|200
5LMV|1|A|C|201
5LMV|1|A|U|202
5LMV|1|A|U|203
5LMV|1|A|U|204
5LMV|1|A|G|216
5LMV|1|A|C|217

Current chains

Chain A

16S ribosomal RNA

Nearby chains