HL_5LYB_020
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5LYB|1|1|U|879, 5LYB|1|1|A|883, 5LYB|1|1|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_020 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.0456
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5LYB|1|1|A|876
5LYB|1|1|C|877
5LYB|1|1|G|878
5LYB|1|1|U|879
5LYB|1|1|G|880
5LYB|1|1|C|881
5LYB|1|1|A|882
5LYB|1|1|A|883
5LYB|1|1|A|884
5LYB|1|1|U|885
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain M7
- 60S ribosomal protein L17-A
- Chain O7
- 60S ribosomal protein L37-A
Coloring options: