HL_5LYB_024

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5LYB|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_024 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.0744

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5LYB|1|1|C|1076
5LYB|1|1|U|1077
5LYB|1|1|U|1078
5LYB|1|1|A|1079
5LYB|1|1|A|1080
5LYB|1|1|U|1081
5LYB|1|1|U|1082
5LYB|1|1|G|1083

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L5

60S ribosomal protein L5

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29