3D structure

PDB id
5LYB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
AUUUUGUUGGUUUCU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LYB_091 not in the Motif Atlas
Homologous match to HL_4V88_205
Geometric discrepancy: 0.1881
The information below is about HL_4V88_205
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_88364.1
Basepair signature
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

5LYB|1|2|A|829
5LYB|1|2|U|830
5LYB|1|2|U|831
5LYB|1|2|U|832
5LYB|1|2|U|833
5LYB|1|2|G|834
5LYB|1|2|U|835
5LYB|1|2|U|836
5LYB|1|2|G|837
5LYB|1|2|G|838
5LYB|1|2|U|839
5LYB|1|2|U|840
5LYB|1|2|U|841
5LYB|1|2|C|842
5LYB|1|2|U|843

Current chains

Chain 2
18S rRNA

Nearby chains

Chain C1
40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A

Coloring options:


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