HL_5LYB_191
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GAUGAUUC
- Length
- 8 nucleotides
- Bulged bases
- 5LYB|1|6|U|249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_191 not in the Motif Atlas
- Homologous match to HL_4V88_191
- Geometric discrepancy: 0.0769
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5LYB|1|6|G|243
5LYB|1|6|A|244
5LYB|1|6|U|245
5LYB|1|6|G|246
5LYB|1|6|A|247
5LYB|1|6|U|248
5LYB|1|6|U|249
5LYB|1|6|C|250
Current chains
- Chain 6
- 18S rRNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
Coloring options: