HL_5LYB_193

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5LYB|1|6|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_193 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0607

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5LYB|1|6|G|330
5LYB|1|6|A|331
5LYB|1|6|U|332
5LYB|1|6|A|333
5LYB|1|6|G|334
5LYB|1|6|U|335
5LYB|1|6|G|336
5LYB|1|6|G|337
5LYB|1|6|C|338

Current chains

Chain 6

18S rRNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A

Chain s8

40S ribosomal protein S8-A