HL_5LYB_245

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_245 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.366

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52616.1

Basepair signature

cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

Number of instances in this motif group

1

Unit IDs

5LYB|1|2|A|1691
5LYB|1|2|G|1692
5LYB|1|2|A|1693
5LYB|1|2|A|1694
5LYB|1|2|G|1695
5LYB|1|2|G|1696
5LYB|1|2|G|1697
5LYB|1|2|G|1698
5LYB|1|2|G|1699
5LYB|1|2|C|1700
5LYB|1|2|A|1701
5LYB|1|2|A|1702
5LYB|1|2|C|1703
5LYB|1|2|U|1704
5LYB|1|2|C|1705
5LYB|1|2|C|1706
5LYB|1|2|A|1707
5LYB|1|2|U|1708
5LYB|1|2|C|1709
5LYB|1|2|U|1710

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A