HL_5LZB_014

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5LZB|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZB_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1779

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5LZB|1|A|C|487
5LZB|1|A|G|488
5LZB|1|A|G|489
5LZB|1|A|C|490
5LZB|1|A|G|491
5LZB|1|A|A|492
5LZB|1|A|G|493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24