HL_5LZB_034

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5LZB|1|A|A|1453, 5LZB|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZB_034 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1546

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZB|1|A|C|1451
5LZB|1|A|G|1452
5LZB|1|A|A|1453
5LZB|1|A|C|1454
5LZB|1|A|G|1455
5LZB|1|A|G|1456
5LZB|1|A|U|1457
5LZB|1|A|U|1458
5LZB|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17