3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
5LZB|1|A|A|1913, 5LZB|1|A|C|1914, 5LZB|1|A|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZB_046 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.1921
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

5LZB|1|A|G|1910
5LZB|1|A|PSU|1911
5LZB|1|A|A|1912
5LZB|1|A|A|1913
5LZB|1|A|C|1914
5LZB|1|A|3TD|1915
5LZB|1|A|A|1916
5LZB|1|A|PSU|1917
5LZB|1|A|A|1918
5LZB|1|A|A|1919
5LZB|1|A|C|1920

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain v
Transfer RNA; tRNA
Chain x
SECIS mRNA

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