HL_5LZB_077

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZB_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1632

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZB|1|a|A|320
5LZB|1|a|A|321
5LZB|1|a|C|322
5LZB|1|a|U|323
5LZB|1|a|G|324
5LZB|1|a|A|325
5LZB|1|a|G|326
5LZB|1|a|A|327
5LZB|1|a|C|328
5LZB|1|a|A|329
5LZB|1|a|C|330
5LZB|1|a|G|331
5LZB|1|a|G|332
5LZB|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20