HL_5LZB_084
3D structure
- PDB id
- 5LZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZB_084 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.1244
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5LZB|1|a|C|689
5LZB|1|a|G|690
5LZB|1|a|G|691
5LZB|1|a|U|692
5LZB|1|a|G|693
5LZB|1|a|A|694
5LZB|1|a|A|695
5LZB|1|a|A|696
5LZB|1|a|U|697
5LZB|1|a|G|698
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S21
- Chain x
- SECIS mRNA
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