HL_5LZB_103
3D structure
- PDB id
- 5LZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZB_103 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.1783
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5LZB|1|v|G|31
5LZB|1|v|C|32
5LZB|1|v|U|33
5LZB|1|v|C|34
5LZB|1|v|A|35
5LZB|1|v|U|36
5LZB|1|v|A|37
5LZB|1|v|A|38
5LZB|1|v|C|39
Current chains
- Chain v
- fMet-tRNAfMet
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain x
- SECIS mRNA
Coloring options: