HL_5LZE_034

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5LZE|1|A|G|1452, 5LZE|1|A|A|1453, 5LZE|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_034 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2816

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZE|1|A|C|1451
5LZE|1|A|G|1452
5LZE|1|A|A|1453
5LZE|1|A|C|1454
5LZE|1|A|G|1455
5LZE|1|A|G|1456
5LZE|1|A|U|1457
5LZE|1|A|U|1458
5LZE|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17