HL_5LZE_052

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5LZE|1|A|A|2268, 5LZE|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0785

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|C|2264
5LZE|1|A|U|2265
5LZE|1|A|A|2266
5LZE|1|A|A|2267
5LZE|1|A|A|2268
5LZE|1|A|G|2269
5LZE|1|A|A|2270
5LZE|1|A|G|2271
5LZE|1|A|U|2272
5LZE|1|A|A|2273
5LZE|1|A|A|2274
5LZE|1|A|C|2275
5LZE|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27