HL_5LZE_064

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5LZE|1|A|G|2751, 5LZE|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0752

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|C|2745
5LZE|1|A|U|2746
5LZE|1|A|G|2747
5LZE|1|A|A|2748
5LZE|1|A|A|2749
5LZE|1|A|A|2750
5LZE|1|A|G|2751
5LZE|1|A|C|2752
5LZE|1|A|A|2753
5LZE|1|A|U|2754
5LZE|1|A|C|2755
5LZE|1|A|U|2756
5LZE|1|A|A|2757
5LZE|1|A|A|2758
5LZE|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6