HL_5LZE_087

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5LZE|1|a|U|842, 5LZE|1|a|G|844, 5LZE|1|a|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_087 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2728

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5LZE|1|a|C|840
5LZE|1|a|C|841
5LZE|1|a|U|842
5LZE|1|a|U|843
5LZE|1|a|G|844
5LZE|1|a|A|845
5LZE|1|a|G|846

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S18