HL_5LZF_012

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5LZF|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1123

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5LZF|1|A|G|410
5LZF|1|A|G|411
5LZF|1|A|A|412
5LZF|1|A|C|413
5LZF|1|A|C|414
5LZF|1|A|A|415
5LZF|1|A|U|416
5LZF|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains