HL_5LZF_046
3D structure
- PDB id
- 5LZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 5LZF|1|A|A|1913, 5LZF|1|A|C|1914, 5LZF|1|A|A|1916
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZF_046 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.2364
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5LZF|1|A|G|1910
5LZF|1|A|PSU|1911
5LZF|1|A|A|1912
5LZF|1|A|A|1913
5LZF|1|A|C|1914
5LZF|1|A|3TD|1915
5LZF|1|A|A|1916
5LZF|1|A|PSU|1917
5LZF|1|A|A|1918
5LZF|1|A|A|1919
5LZF|1|A|C|1920
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- Selenocysteine transfer RNA
Coloring options: