HL_5LZF_050

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

5LZF|1|A|A|2211, 5LZF|1|A|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_050 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1956

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

5LZF|1|A|G|2209
5LZF|1|A|U|2210
5LZF|1|A|A|2211
5LZF|1|A|A|2212
5LZF|1|A|U|2213
5LZF|1|A|C|2214
5LZF|1|A|C|2215

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2