HL_5LZS_101

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

5LZS|1|9|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_101 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5287

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZS|1|9|U|885
5LZS|1|9|A|886
5LZS|1|9|U|887
5LZS|1|9|U|888
5LZS|1|9|U|889
5LZS|1|9|U|890
5LZS|1|9|G|891
5LZS|1|9|U|892
5LZS|1|9|U|893
5LZS|1|9|G|894
5LZS|1|9|G|895
5LZS|1|9|U|896
5LZS|1|9|U|897
5LZS|1|9|U|898
5LZS|1|9|U|899
5LZS|1|9|C|900
5LZS|1|9|G|901

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

uS17