HL_5LZT_101

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

5LZT|1|9|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZT_101 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4806

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZT|1|9|U|885
5LZT|1|9|A|886
5LZT|1|9|U|887
5LZT|1|9|U|888
5LZT|1|9|U|889
5LZT|1|9|U|890
5LZT|1|9|G|891
5LZT|1|9|U|892
5LZT|1|9|U|893
5LZT|1|9|G|894
5LZT|1|9|G|895
5LZT|1|9|U|896
5LZT|1|9|U|897
5LZT|1|9|U|898
5LZT|1|9|U|899
5LZT|1|9|C|900
5LZT|1|9|G|901

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

eS6