HL_5LZU_088

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5LZU|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_088 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2198

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5LZU|1|9|G|288
5LZU|1|9|G|289
5LZU|1|9|U|290
5LZU|1|9|G|291
5LZU|1|9|A|292
5LZU|1|9|C|293
5LZU|1|9|U|294
5LZU|1|9|C|295

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain LL

uS17