HL_5LZU_100

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

5LZU|1|9|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_100 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.48

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZU|1|9|U|885
5LZU|1|9|A|886
5LZU|1|9|U|887
5LZU|1|9|U|888
5LZU|1|9|U|889
5LZU|1|9|U|890
5LZU|1|9|G|891
5LZU|1|9|U|892
5LZU|1|9|U|893
5LZU|1|9|G|894
5LZU|1|9|G|895
5LZU|1|9|U|896
5LZU|1|9|U|897
5LZU|1|9|U|898
5LZU|1|9|U|899
5LZU|1|9|C|900
5LZU|1|9|G|901

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain LL

uS17